Software at UCSF

Definition: A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers.
Subcategories: Algorithmic software component, Algorithmic software suite

All MCB Mission Bay Parnassus

MCB

Research Resource Program Software Services

Office of Research Services, MCB
Contact: Desiree Porter 415-476-3194 RRPSoftware@ucsf.edu

Mission Bay

Biochemistry and Biophysics, Mission Bay
Contact: General Inquiries 415-418-3658 eric.chow@ucsf.edu

Mission Bay

Center for AIDS Research, Mission Bay
Contact: Jeffrey Martin 415-514-8010 martin@psg.ucsf.edu

Mission Bay

Gladstone Institutes, Mission Bay
Contact: General Inquiries bioinformatics@gladstone.ucsf.edu

Mission Bay

Gladstone Institute of Neurological Disease, Mission Bay
Contact: General Inquiries Michael.Gill@gladstone.ucsf.edu

Mission Bay

Resource for Biocomputing, Visualization, and Informatics, Mission Bay
Contact: Scooter Morris 415-514-4406 scooter@cgl.ucsf.edu

Alignments -- pairwise and multiple alignment tools for sequences
Cytoscape network analysis
EMBOSS Software
Genome tools -- gene finding, comparing gene locations across species
Phylogenetics tools
Transmembrane segment prediction and display programs -- HMMTOP, Memsat, TMHMM, and TOPO2
W2H interfaces to EMBOSS

Parnassus

Departments of Pathology and Medicine, Parnassus
Contact: Jordan Briscoe 415-476-4550 bidc@ucsf.edu

Parnassus

Radiology and Biomedical Imaging, Parnassus
Contact: Duan Xu, PhD 415-514-4455 duan.xu@ucsf.edu