Software at UCSF
- Definition
- A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers.
- Subcategories
- Algorithmic software component, Algorithmic software suite
Research Resource Program Software Services
Office of Research Services,
MCB
Contact: Rochelle Kelley
415-502-1836
RRPSoftware@ucsf.edu
- FlowJo
Center for Advanced Technology
Biochemistry and Biophysics,
Mission Bay
Contact: General Inquiries
415-418-3658
eric.chow@ucsf.edu
- GenePix Pro 6.0
CFAR Population and Clinical Sciences Core
Center for AIDS Research,
Mission Bay
Contact: Jeffrey Martin
415-514-8010
martin@psg.ucsf.edu
- Statistical and database management software
Gladstone Bioinformatics Core
Gladstone Institutes,
Mission Bay
Contact: General Inquiries
bioinformatics@gladstone.ucsf.edu
- Simulation programming with R / Perl / Python
Gladstone Neurobehavioral Core
Gladstone Institute of Neurological Disease,
Mission Bay
Contact: General Inquiries
Michael.Gill@gladstone.ucsf.edu
- HomeCageScan and SocialScan Videoanalysis software (CleverSys)
- Noldus EthoVision Videotracking software
Sequence Analysis and Consulting Service
Resource for Biocomputing, Visualization, and Informatics,
Mission Bay
Contact: Scooter Morris
415-514-4406
scooter@cgl.ucsf.edu
- Alignments -- pairwise and multiple alignment tools for sequences
- Cytoscape network analysis
- EMBOSS Software
- Genome tools -- gene finding, comparing gene locations across species
- Phylogenetics tools
- Transmembrane segment prediction and display programs -- HMMTOP, Memsat, TMHMM, and TOPO2
- W2H interfaces to EMBOSS
Biological Imaging Development Center
Departments of Pathology and Medicine,
Parnassus
Contact: Jordan Briscoe
415-476-4550
bidc@ucsf.edu
- Image analysis software
- Imaris
- Matlab
- Metamorph
- NIS Elements
- Solidworks
Scientific Computing Services
Radiology and Biomedical Imaging,
Parnassus
Contact: Duan Xu, PhD
415-514-4455
duan.xu@ucsf.edu
- Shared software packages