Software at UCSF

Definition
A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers.
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China Basin

CTSI Biomedical Informatics (BI) Program

CTSI, Dept of Epidemiology and Biostatistics, China Basin

  • Bioconductor, R, other freeware
Mission Bay

Cancer Center Computational Biology Core

UCSF Helen Diller Family Comprehensive Cancer Center, Mission Bay
Contact: Adam Olshen 415-514-9406 olshena@biostat.ucsf.edu

  • R (Bioconductor and custom packages), Gene Pattern, GSEA
Mission Bay

Center for Advanced Technology

Biochemistry and Biophysics, Mission Bay
Contact: General Inquiries 415-418-3658 eric.chow@ucsf.edu

  • GenePix Pro 6.0
Mission Bay

CFAR Population and Clinical Sciences Core

Center for AIDS Research, Mission Bay
Contact: Jeffrey Martin 415-514-8010 martin@psg.ucsf.edu

  • Statistical and database management software
Mission Bay

Gladstone Bioinformatics Core

Gladstone Institutes, Mission Bay
Contact: General Inquiries bioinformatics@gladstone.ucsf.edu

  • Simulation programming with R / Perl / Python
Mission Bay

Gladstone Neurobehavioral Core

Gladstone Institute of Neurological Disease, Mission Bay
Contact: General Inquiries michael.gill@gladstone.ucsf.edu

  • HomeCageScan and SocialScan Videoanalysis software (CleverSys)
  • Noldus EthoVision Videotracking software
Mission Bay

Sequence Analysis and Consulting Service

Computer Graphics Laboratory, Pharmaceutical Chemistry, Mission Bay
Contact: Scooter Morris 415-514-4406 scooter@cgl.ucsf.edu

  • Cytoscape network analysis
  • EMBOSS Software
  • W2H interfaces to EMBOSS
Parnassus

Biological Imaging Development Center

Department of Pathology, Parnassus
Contact: Kaitlin Corbin 415-476-4550 kaitlin.corbin@ucsf.edu

  • Imaris
  • Matlab
  • Metamorph
  • NIS Elements
  • Solidworks
Parnassus

DERC Microscopy Core

Diabetes Center, Parnassus
Contact: General Inquiries 415-999-4758 larry.ackerman@ucsf.edu

  • Image Analysis Software