Software at UCSF
- Definition
- A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers.
- Subcategories
- Algorithmic software component
Research Resource Program Software Services
Office of Research Services,
MCB
Contact: Rochelle Kelley
415-502-1836
RRPSoftware@ucsf.edu
- FlowJo
CFAR; Clinical and Population Sciences
Center for AIDS Research,
Mission Bay
Contact: General Inquiries
(415) 476-4082 ext. 404
sdeeks@php.ucsf.edu
- Statistical and database management software
Gladstone Bioinformatics Core
Gladstone Institutes,
Mission Bay
Contact: General Inquiries
bioinformatics@gladstone.ucsf.edu
- Simulation programming with R / Perl / Python
Gladstone Neurobehavioral Core
Gladstone Institute of Neurological Disease,
Mission Bay
Contact: General Inquiries
415-734-2655
jeffrey.simms@gladstone.ucsf.edu
- HomeCageScan and SocialScan Videoanalysis software (CleverSys)
- Noldus EthoVision Videotracking software
Sequence Analysis and Consulting Service
Resource for Biocomputing, Visualization, and Informatics,
Mission Bay
Contact: Scooter Morris
scooter@cgl.ucsf.edu
- Alignments -- pairwise and multiple alignment tools for sequences
- Cytoscape network analysis
- EMBOSS Software
- Genome tools -- gene finding, comparing gene locations across species
- Phylogenetics tools
- Transmembrane segment prediction and display programs -- HMMTOP, Memsat, TMHMM, and TOPO2
- W2H interfaces to EMBOSS
Biological Imaging Development Center
Departments of Pathology and Medicine,
Parnassus
Contact: General Inquiries
(415) 476-4550
bidc@ucsf.edu
- Image analysis software
- Imaris
- Matlab
- Metamorph
- NIS Elements
- Solidworks