Bioinformatics analysis at UCSF

Definition
A data transformation technique that involves the analysis of bioinformatics data, which is the application of statistics and computer science to the field of molecular biology.
Categories
→ Bioinformatics analysis
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Drug Studies Unit (South San Francisco)

Bioanalytical Core (BAC)

Biopharmaceutical Sciences, Drug Studies Unit (South San Francisco)
Contact: Yong Huang yong.huang@ucsf.edu

  • Small endogenous compound and biomarker analysis
Laurel Heights

Comparative Effectiveness Large Dataset Analysis Core (CELDAC)

CTSI, Institute for Health Policy Studies, Laurel Heights
Contact: Claire C. Will

  • Analytic/statistical support
Mission Bay

Cancer Center Computational Biology Core

UCSF Helen Diller Family Comprehensive Cancer Center, Mission Bay
Contact: Adam Olshen 415-514-9406 olshena@biostat.ucsf.edu

  • Array quantitation and analysis
  • Microarray analysis - CGH and oligo arrays, applications in biomarker discovery, medical genetics, cell lines, mouse and human biology, patient stratification
  • Pathway analysis
Mission Bay

CFAR Population and Clinical Sciences Core

Center for AIDS Research, Mission Bay
Contact: Jeffrey Martin 415-514-8010 martin@psg.ucsf.edu

  • Biostatistical data support
Mission Bay

CTSI Consultation Services

CTSI, Mission Bay
Contact: Molly Belinski 415-514-6206 ctsi.consulting@ucsf.edu

  • Biostatistics and Bioinformatics
Mission Bay

Gladstone Bioinformatics Core

Gladstone Institutes, Mission Bay
Contact: General Inquiries bioinformatics@gladstone.ucsf.edu

  • Analysis of Complex Data Sets
  • ChIP-seq & mRNA-seq
  • Genotype/SNP Analysis
  • Network and pathway analysis
  • Novel statistical methods
  • Statistical analysis with R
  • WES/Exome analysis
SFGH

Cancer Center Tobacco Biomarkers Core

UCSF Helen Diller Family Comprehensive Cancer Center, SFGH
Contact: Peyton Jacob, III, PhD 415-282-9495 peyton.jacob@ucsf.edu

  • Measure Biomarkers for Exposure to Polycyclic Aromatic Hydrocarbons, a major class of carcinogens